Excluded ipynb files from json pretty formatter + poetry update (#50)

* Excluded ipynb files from json pretty formatter +  poetry update
* Reworked pip audit
* Relocated dependencies
* Reworked the tests a bit.
* Poetry update
* Excluded lint and test workflows against the target branch

.github/workflows/lint-actions.yaml

@@ -49,7 +49,7 @@ jobs:
     - run: poetry install --without develop,doc
     - name: Run linters
       run: |
-        mypy src tests
+        mypy src tests --install-types --non-interactive
 
   ruff:
     runs-on: ubuntu-latest
@@ -85,8 +85,8 @@ jobs:
       run: poetry export -f requirements.txt --output requirements.txt
     - name: Check license
       run: |
-        poetry run pip install pip-licenses
-        poetry run pip-licenses --format=markdown --output-file=license-summary.md
+        pip install pip-licenses
+        pip-licenses --format=markdown --output-file=license-summary.md
     - name: Archive license summary
       uses: actions/upload-artifact@v3
       with:
@@ -95,6 +95,7 @@ jobs:
           license-summary.md
           requirements.txt
     - name: Check requirements security with pip-audit
-      uses: pypa/gh-action-pip-audit@v1.0.0
-      with:
-        inputs: requirements.txt
+      run: |
+        pip install pip-audit
+        pip-audit -r requirements.txt --no-deps --disable-pip || true
+        pip-audit -r requirements.txt --format=markdown --output=lbr-audit.md --no-deps --disable-pip

.github/workflows/test-and-build-action.yaml

@@ -2,7 +2,6 @@ name: Test & Build
 
 on:
   pull_request:
-  pull_request_target:
   push:
     paths:
     - '*.py'

.pre-commit-config.yaml

@@ -22,6 +22,7 @@ repos:
   - id: destroyed-symlinks
   - id: debug-statements
   - id: pretty-format-json
+    exclude: (\.ipynb$)
 
 - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
@@ -52,7 +53,7 @@ repos:
 
 
 - repo: https://github.com/pre-commit/mirrors-mypy
-  rev: v1.4.1
+  rev: v1.5.0
   hooks:
   - id: mypy
     additional_dependencies:
@@ -77,6 +78,6 @@ repos:
   - id: validate-html
 
 - repo: https://github.com/python-jsonschema/check-jsonschema
-  rev: 0.24.0
+  rev: 0.24.1
   hooks:
   - id: check-github-workflows

pyproject.toml

@@ -6,6 +6,7 @@ requires = ["poetry-core"]
 disallow_untyped_defs = true
 exclude = ".ipynb_checkpoints, .mypy_cache, .mytest_cache, build"
 follow_imports = "silent"
+ignore_missing_imports = true
 plugins = ["sqlalchemy.ext.mypy.plugin"]
 python_version = "3.11"
 warn_redudant_casts = true
@@ -40,7 +41,6 @@ python = "^3.11"
 seaborn = "^0.12.2"
 selenium = "^4.10.0"
 tqdm = "^4.65.0"
-types-tqdm = "^4.65.0"
 
 [tool.poetry.group.develop.dependencies]
 black = {extras = ["jupyter"], version = "^23.3.0"}
@@ -64,8 +64,11 @@ sphinxcontrib-napoleon = "^0.7"
 black = "^23.3.0"
 mypy = "^1.3.0"
 pandas-stubs = "^2.0.1.230501"
+pip-audit = "^2.6.1"
+pip-licenses = "^4.3.2"
 ruff = "^0.0.270"
 types-requests = "^2.31.0.1"
+types-tqdm = "^4.65.0"
 
 [tool.poetry.group.test.dependencies]
 pytest = "^7.3.1"